Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs74736738 chr7:148940520 G/A 5.13E-5 403 14.2 15.87 3.43 KM Plot
STAD rs75001734 chr7:148991638 G/A 4.52E-5 405 14.22 16.38 3.43 KM Plot
STAD rs7503366 chr17:72895244 C/A 1.51E-5 405 6.27 21.33 14.07 KM Plot
STAD rs75152896 chr6:34477793 G/A 3.75E-5 394 14.25 12.77 3.5 KM Plot
STAD rs7515739 chr1:227455092 C/T 0 404 14.25 14.45 1.48 KM Plot
STAD rs7516700 chr1:197110331 T/G 1.2E-7 406 4.02 17.05 14.07 KM Plot
STAD rs7517840 chr1:40725326 G/A 6.51E-9 393 14.93 12.6 3.13 KM Plot
STAD rs75251655 chr1:182717341 T/C 3.68E-5 403 14.22 15.6 4.75 KM Plot
STAD rs7526283 chr1:227446928 G/C 0 402 14.27 14.45 1.48 KM Plot
STAD rs7530299 chr1:197044165 T/C 5.24E-7 406 5.8 17.77 14.07 KM Plot
STAD rs7530627 chr1:197044480 T/C 5.24E-7 406 5.8 17.77 14.07 KM Plot
STAD rs7530796 chr1:197044618 T/C 5.24E-7 406 5.8 17.77 14.07 KM Plot
STAD rs75350334 chr1:227330276 C/T 0 405 14.37 14.15 1.48 KM Plot
STAD rs75377233 chr1:227414176 G/C 0 404 14.27 14.15 1.48 KM Plot
STAD rs7539627 chr1:182691080 G/A 5.94E-6 401 14.07 17.3 4.75 KM Plot